PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_25870V3.5.p
Common NamePHYPADRAFT_224453
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YB
Protein Properties Length: 126aa    MW: 13380.8 Da    PI: 4.4853
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_25870V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB34.93.8e-1116664090
              NF-YB 40 sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                        efi +++se+++ c +++++ti+++ +l al  lGf +y+ ++++  +++
  Pp3c3_25870V3.5.p 16 KEFINLISSESNEICSKDEKRTIAPEHVLRALEILGFGEYIGEVQAAYEQH 66
                       59***************************************9998766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-2016111IPR009072Histone-fold
SuperFamilySSF471138.15E-1816111IPR009072Histone-fold
PfamPF008083.6E-71647IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDTAGSRPKD DVSLPKEFIN LISSESNEIC SKDEKRTIAP EHVLRALEIL GFGEYIGEVQ  60
AAYEQHKNES LESPKVGGRW AKEGGGGGMT EEEAIAAQQR MFAEARARMN SGGAAAPAAQ  120
ANDSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-231210643133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001780865.13e-65predicted protein
SwissprotP495922e-43NC2B_ARATH; Protein Dr1 homolog
TrEMBLA9TQH03e-65A9TQH0_PHYPA; Predicted protein
STRINGPP1S288_38V6.18e-65(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.31e-35nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]